The 2.0 version of rSNPBase

Variant report

Variant rs7597188
Chromosome Location chr2:54241869-54241870
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54208400-54248200 Weak transcription Lung lung
2 chr2:54211400-54243000 Weak transcription Fetal Muscle Leg muscle
3 chr2:54213600-54249800 Weak transcription Left Ventricle heart
4 chr2:54215000-54242800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr2:54216400-54242000 Weak transcription Fetal Intestine Small intestine
6 chr2:54217000-54248200 Weak transcription Gastric stomach
7 chr2:54226600-54243000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr2:54228800-54243400 Weak transcription Fetal Lung lung
9 chr2:54229000-54243000 Weak transcription Right Atrium heart
10 chr2:54229200-54245800 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr2:54234400-54242800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr2:54235400-54242800 Weak transcription Ovary ovary
13 chr2:54235400-54246400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr2:54235800-54243600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr2:54237200-54243000 Weak transcription Brain Hippocampus Middle brain
16 chr2:54237200-54243000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr2:54237400-54243000 Weak transcription Brain Cingulate Gyrus brain
18 chr2:54238000-54242400 Enhancers Primary T helper cells PMA-I stimulated --
19 chr2:54238200-54246800 Weak transcription Spleen Spleen
20 chr2:54238400-54242600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr2:54238600-54242600 Weak transcription NHDF-Ad bronchial
22 chr2:54239200-54242800 Enhancers Primary T cells fromperipheralblood blood
23 chr2:54239600-54242000 Enhancers Primary B cells from peripheral blood blood
24 chr2:54239600-54242800 Enhancers Primary T helper cells fromperipheralblood blood
25 chr2:54239800-54242200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
26 chr2:54239800-54242800 Enhancers Primary Natural Killer cells fromperipheralblood blood
27 chr2:54240000-54242400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
28 chr2:54240000-54242600 Weak transcription Brain Substantia Nigra brain
29 chr2:54240000-54242800 Weak transcription Placenta Placenta
30 chr2:54240000-54248200 Weak transcription Psoas Muscle Psoas
31 chr2:54240200-54242400 Weak transcription Stomach Smooth Muscle stomach
32 chr2:54240200-54242800 Weak transcription Brain Anterior Caudate brain
33 chr2:54240200-54243000 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr2:54240200-54243000 Weak transcription Rectal Smooth Muscle rectum
35 chr2:54240200-54243800 Enhancers Primary T cells from cord blood blood
36 chr2:54240200-54248000 Weak transcription Adipose Nuclei Adipose
37 chr2:54240200-54257000 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr2:54240600-54248200 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr2:54241200-54242600 Weak transcription Colon Smooth Muscle Colon
40 chr2:54241400-54242200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
41 chr2:54241400-54245600 Weak transcription Fetal Muscle Trunk muscle
42 chr2:54241400-54247400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr2:54241400-54248200 Weak transcription Thymus Thymus
44 chr2:54241600-54242200 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr2:54241600-54242200 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr2:54241600-54242200 Enhancers Primary T regulatory cells fromperipheralblood blood
47 chr2:54241600-54242800 Weak transcription Primary hematopoietic stem cells blood
48 chr2:54241600-54242800 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr2:54241600-54243000 Enhancers Primary T killer naive cells fromperipheralblood blood
50 chr2:54241600-54243000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015