Variant report

Variant	rs7633346
Chromosome Location	chr3:150228412-150228413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513368	1.00[CHB][hapmap]
rs10513369	1.00[CHB][hapmap]
rs10513370	1.00[CHB][hapmap]
rs10513371	1.00[CHB][hapmap]
rs13073230	1.00[CHB][hapmap]
rs1376027	1.00[CHB][hapmap]
rs17278131	1.00[CHB][hapmap]
rs2868430	1.00[CHB][hapmap]
rs3749400	1.00[CHB][hapmap]
rs6791546	1.00[CHB][hapmap]
rs6799981	1.00[CHB][hapmap]
rs73167594	1.00[ASN][1000 genomes]
rs73167595	1.00[ASN][1000 genomes]
rs73169809	0.93[ASN][1000 genomes]
rs73169813	0.93[ASN][1000 genomes]
rs73169817	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150214000-150233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:150228000-150229800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:150228400-150229600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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