Variant report

Variant	rs7642406
Chromosome Location	chr3:155407484-155407485
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10513482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13085233	1.00[JPT][hapmap]
rs17205089	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs17347992	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6441007	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6441008	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6806485	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs6806592	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap]
rs6808225	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7610374	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7639915	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155400600-155408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:155400800-155418400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155401000-155408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:155404600-155408000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155404600-155408400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155406400-155408600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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