Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155406669..155408242-chr3:155411925..155413754,2	K562	blood:
2	chr3:155406187..155408621-chr3:155417875..155419444,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13070022	0.94[AMR][1000 genomes]
rs13070162	0.87[AMR][1000 genomes]
rs13085233	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17205089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17347992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34394924	0.84[ASN][1000 genomes]
rs34588813	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35123304	0.84[ASN][1000 genomes]
rs35159932	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3851357	1.00[YRI][hapmap]
rs6441007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6441008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67059217	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs67916393	0.84[ASN][1000 genomes]
rs6806485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6806592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6808225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs71310442	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7610374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7642406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642513	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7642655	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155395000-155416800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155395200-155412000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155400600-155408800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:155400800-155418400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155401000-155408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:155404600-155408000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155404600-155408400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155406400-155408600	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search: