Variant report

Variant	rs34394924
Chromosome Location	chr3:155379581-155379582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155379377..155381344-chr3:155382651..155384726,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10513482	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070022	0.90[ASN][1000 genomes]
rs13070162	0.90[ASN][1000 genomes]
rs13082172	0.81[EUR][1000 genomes]
rs17205089	1.00[ASN][1000 genomes]
rs17347992	1.00[ASN][1000 genomes]
rs34588813	1.00[ASN][1000 genomes]
rs35123304	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35159932	1.00[ASN][1000 genomes]
rs6441007	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441008	1.00[ASN][1000 genomes]
rs67059217	1.00[ASN][1000 genomes]
rs67916393	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806485	1.00[ASN][1000 genomes]
rs6806592	0.84[ASN][1000 genomes]
rs6807567	0.84[ASN][1000 genomes]
rs6808225	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310442	1.00[ASN][1000 genomes]
rs7610374	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636687	0.83[EUR][1000 genomes]
rs7636703	0.83[EUR][1000 genomes]
rs7639887	0.84[EUR][1000 genomes]
rs7639915	0.84[ASN][1000 genomes]
rs7642513	1.00[ASN][1000 genomes]
rs7642655	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651444	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378200-155380200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:155378600-155381200	Enhancers	A549	lung
3	chr3:155378800-155379800	Enhancers	Duodenum Mucosa	Duodenum
4	chr3:155378800-155380000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:155378800-155380200	Enhancers	Fetal Intestine Small	intestine
6	chr3:155378800-155380200	Enhancers	HepG2	liver
7	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
8	chr3:155379000-155379800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:155379000-155380000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:155379000-155380000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:155379000-155380000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:155379000-155380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:155379000-155380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:155379000-155380000	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:155379000-155380000	Enhancers	Fetal Thymus	thymus
16	chr3:155379000-155380000	Enhancers	Thymus	Thymus
17	chr3:155379000-155380200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:155379000-155382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:155379200-155380000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:155379200-155380000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155379400-155379600	Flanking Active TSS	Stomach Mucosa	stomach
22	chr3:155379400-155380000	Enhancers	Small Intestine	intestine
23	chr3:155379400-155381400	Weak transcription	Fetal Lung	lung
24	chr3:155379400-155382000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
27	chr3:155379400-155383000	Weak transcription	Gastric	stomach

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