Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155383548..155385347-chr3:155462501..155464169,2	K562	blood:

Variant related genes	Relation type
ENSG00000114805	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10513482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070022	0.90[ASN][1000 genomes]
rs13070162	0.90[ASN][1000 genomes]
rs13082172	0.81[EUR][1000 genomes]
rs17205089	1.00[ASN][1000 genomes]
rs17347992	1.00[ASN][1000 genomes]
rs34394924	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34588813	1.00[ASN][1000 genomes]
rs35123304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35159932	1.00[ASN][1000 genomes]
rs6441007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441008	1.00[ASN][1000 genomes]
rs67059217	1.00[ASN][1000 genomes]
rs6806485	1.00[ASN][1000 genomes]
rs6806592	0.84[ASN][1000 genomes]
rs6807567	0.84[ASN][1000 genomes]
rs6808225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310442	1.00[ASN][1000 genomes]
rs7610374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636687	0.83[EUR][1000 genomes]
rs7636703	0.83[EUR][1000 genomes]
rs7639887	0.84[EUR][1000 genomes]
rs7639915	0.84[ASN][1000 genomes]
rs7642513	1.00[ASN][1000 genomes]
rs7642655	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651444	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
2	chr3:155381200-155386200	Enhancers	Fetal Intestine Small	intestine
3	chr3:155382800-155385200	Enhancers	Stomach Mucosa	stomach
4	chr3:155383400-155385000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:155383400-155385200	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:155383400-155385600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:155383400-155387000	Enhancers	HepG2	liver
8	chr3:155383400-155390200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
13	chr3:155384000-155385200	Enhancers	A549	lung

Quick Search: