Variant report

Variant	rs7610374
Chromosome Location	chr3:155382134-155382135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10513482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070022	0.90[ASN][1000 genomes]
rs13070162	0.90[ASN][1000 genomes]
rs13082172	0.81[EUR][1000 genomes]
rs13085233	1.00[JPT][hapmap]
rs16825274	0.87[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap]
rs17205089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17347992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34394924	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34588813	1.00[ASN][1000 genomes]
rs35123304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35159932	1.00[ASN][1000 genomes]
rs6441007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441008	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67059217	1.00[ASN][1000 genomes]
rs67916393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806485	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6806592	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6807567	0.84[ASN][1000 genomes]
rs6808225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310442	1.00[ASN][1000 genomes]
rs7636687	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7636703	0.83[EUR][1000 genomes]
rs7639887	0.84[EUR][1000 genomes]
rs7639915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7642406	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7642513	1.00[ASN][1000 genomes]
rs7642655	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651444	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
2	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
4	chr3:155379400-155383000	Weak transcription	Gastric	stomach
5	chr3:155379800-155383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:155380000-155382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:155380000-155382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:155380000-155383000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:155380000-155383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:155380000-155383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155380200-155382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:155380200-155382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:155380400-155383400	Enhancers	Brain Germinal Matrix	brain
14	chr3:155381000-155382200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr3:155381000-155382600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:155381200-155382200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr3:155381200-155382800	Enhancers	HepG2	liver
18	chr3:155381200-155383400	Enhancers	Fetal Stomach	stomach
19	chr3:155381200-155383400	Flanking Active TSS	A549	lung
20	chr3:155381200-155386200	Enhancers	Fetal Intestine Small	intestine
21	chr3:155381400-155382200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:155381400-155382200	Enhancers	Brain Anterior Caudate	brain
23	chr3:155381400-155382400	Enhancers	Stomach Mucosa	stomach
24	chr3:155381400-155382600	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:155381400-155382800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr3:155381600-155382800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr3:155381600-155383600	Enhancers	Small Intestine	intestine
28	chr3:155381800-155382600	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:155381800-155382800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:155381800-155383000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:155381800-155383000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr3:155381800-155383200	Enhancers	Brain Hippocampus Middle	brain
33	chr3:155381800-155383400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr3:155382000-155382600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr3:155382000-155383000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr3:155382000-155383000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:155382000-155383200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:155382000-155383400	Enhancers	Colon Smooth Muscle	Colon
39	chr3:155382000-155383600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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