Variant report

Variant	rs10513482
Chromosome Location	chr3:155378797-155378798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs13070022	0.90[ASN][1000 genomes]
rs13070162	0.90[ASN][1000 genomes]
rs13082172	0.81[EUR][1000 genomes]
rs13085233	1.00[JPT][hapmap]
rs16825274	0.87[CEU][hapmap]
rs17205089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17347992	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34394924	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34588813	1.00[ASN][1000 genomes]
rs35123304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35159932	1.00[ASN][1000 genomes]
rs6441007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441008	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67059217	1.00[ASN][1000 genomes]
rs67916393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806485	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6806592	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6807567	0.84[ASN][1000 genomes]
rs6808225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310442	1.00[ASN][1000 genomes]
rs7610374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636687	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7636703	0.83[EUR][1000 genomes]
rs7639887	0.84[EUR][1000 genomes]
rs7639915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7642406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642513	1.00[ASN][1000 genomes]
rs7642655	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651444	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155357400-155379000	Weak transcription	Gastric	stomach
2	chr3:155366600-155379000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155366600-155379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:155375400-155379000	Weak transcription	Thymus	Thymus
5	chr3:155376200-155379000	Weak transcription	Fetal Thymus	thymus
6	chr3:155377000-155378800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:155377000-155378800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:155377000-155378800	Weak transcription	Fetal Intestine Small	intestine
9	chr3:155377200-155379000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:155377200-155379000	Weak transcription	Pancreas	Pancrea
11	chr3:155378000-155378800	Weak transcription	Stomach Mucosa	stomach
12	chr3:155378200-155380200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:155378400-155379000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:155378400-155379400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:155378600-155381200	Enhancers	A549	lung

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