Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036678	0.90[ASN][1000 genomes]
rs10044835	0.90[ASN][1000 genomes]
rs10045093	0.90[ASN][1000 genomes]
rs10054494	0.87[AFR][1000 genomes]
rs10065640	0.82[ASN][1000 genomes]
rs10074908	0.90[ASN][1000 genomes]
rs10075757	0.82[ASN][1000 genomes]
rs10939850	0.90[ASN][1000 genomes]
rs16878193	0.90[ASN][1000 genomes]
rs28509215	0.90[ASN][1000 genomes]
rs3857232	0.82[ASN][1000 genomes]
rs3857235	0.82[ASN][1000 genomes]
rs6449475	0.82[ASN][1000 genomes]
rs6449481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6891919	0.82[ASN][1000 genomes]
rs6898521	0.82[ASN][1000 genomes]
rs73093136	0.82[ASN][1000 genomes]
rs73093145	0.82[ASN][1000 genomes]
rs7712117	0.82[ASN][1000 genomes]
rs7723165	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7723306	0.90[ASN][1000 genomes]
rs7724442	0.82[ASN][1000 genomes]
rs7729781	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291692	0.82[ASN][1000 genomes]
rs9654364	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv881711	chr5:59724947-59890278	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59872000-59873000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:59872200-59873200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr5:59872200-59873400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:59872400-59873400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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