Variant report

Variant	rs7742094
Chromosome Location	chr6:131781390-131781391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131520599..131521909-chr6:131780880..131781727,4	MCF-7	breast:
2	chr6:131778003..131780613-chr6:131780626..131782189,2	MCF-7	breast:
3	chr6:131193460..131194072-chr6:131780514..131781439,2	K562	blood:

Variant related genes	Relation type
ENSG00000118507	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4053138	1.00[ASN][1000 genomes]
rs55824194	1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs58262979	1.00[ASN][1000 genomes]
rs58509935	1.00[ASN][1000 genomes]
rs62423377	1.00[ASN][1000 genomes]
rs73627667	1.00[ASN][1000 genomes]
rs73779848	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1839224	chr6:131703293-131834119	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2829868	chr6:131729859-131898208	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131773000-131781800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:131780200-131782200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:131780200-131783200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:131780400-131782400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:131780600-131781400	Enhancers	Fetal Muscle Leg	muscle
6	chr6:131780800-131781400	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:131781000-131781400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:131781000-131781400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:131781000-131781400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:131781000-131781400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:131781000-131781400	Enhancers	Brain Anterior Caudate	brain
12	chr6:131781000-131781400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:131781000-131781400	Enhancers	Brain Substantia Nigra	brain
14	chr6:131781000-131781400	Enhancers	Fetal Intestine Large	intestine
15	chr6:131781000-131781400	Enhancers	Right Atrium	heart
16	chr6:131781000-131781800	Enhancers	Brain Germinal Matrix	brain
17	chr6:131781000-131781800	Enhancers	Fetal Brain Female	brain
18	chr6:131781000-131782000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:131781000-131782000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:131781000-131782000	Enhancers	Brain Hippocampus Middle	brain
21	chr6:131781000-131782000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr6:131781000-131782000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:131781000-131782200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:131781000-131782400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:131781000-131782400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:131781200-131781400	Enhancers	Pancreas	Pancrea
27	chr6:131781200-131781600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:131781200-131781600	Active TSS	Brain Angular Gyrus	brain
29	chr6:131781200-131781600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:131781200-131781800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:131781200-131782000	Enhancers	Fetal Brain Male	brain
32	chr6:131781200-131782400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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