Variant report

Variant	rs55824194
Chromosome Location	chr6:131978117-131978118
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:131969715..131972703-chr6:131975983..131978268,3	MCF-7	breast:
2	chr6:131975195..131979423-chr6:131980161..131983415,4	MCF-7	breast:
3	chr6:131976024..131978249-chr6:131978401..131982130,4	K562	blood:
4	chr6:131972920..131975695-chr6:131977454..131979633,2	MCF-7	breast:
5	chr6:131947927..131950701-chr6:131977008..131978959,2	K562	blood:

Variant related genes	Relation type
ENSG00000154269	Chromatin interaction
ENSG00000112282	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2066889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4053138	1.00[ASN][1000 genomes]
rs56366541	1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs56708439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58262979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58509935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423377	1.00[ASN][1000 genomes]
rs62423383	1.00[ASN][1000 genomes]
rs62423386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423387	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423390	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423408	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423409	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423410	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423411	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423413	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423414	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423415	1.00[ASN][1000 genomes]
rs62423416	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423417	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423435	1.00[ASN][1000 genomes]
rs62423458	1.00[ASN][1000 genomes]
rs62423459	1.00[ASN][1000 genomes]
rs62424760	1.00[ASN][1000 genomes]
rs62424761	1.00[ASN][1000 genomes]
rs6907886	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001219	1.00[ASN][1000 genomes]
rs73627667	1.00[ASN][1000 genomes]
rs73779848	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742094	1.00[ASN][1000 genomes]
rs7756633	1.00[ASN][1000 genomes]
rs9483319	1.00[ASN][1000 genomes]
rs9493053	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131949800-131983200	Weak transcription	Aorta	Aorta
2	chr6:131972200-131981600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:131974200-131981400	Weak transcription	NH-A	brain
4	chr6:131974400-131992400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:131975200-132008200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:131976000-131978600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:131976000-131996600	Weak transcription	Fetal Intestine Large	intestine
8	chr6:131976200-131996800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:131976600-131981400	Weak transcription	HMEC	breast
10	chr6:131977000-131988000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:131977000-131997000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:131977600-131978600	Weak transcription	HepG2	liver
13	chr6:131978000-131979600	Enhancers	K562	blood

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