Variant report

Variant	rs56708439
Chromosome Location	chr6:131989952-131989953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131989678..131992068-chr6:131997979..131999879,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2066889	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4053138	1.00[ASN][1000 genomes]
rs55824194	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366541	1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs58262979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58509935	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423377	1.00[ASN][1000 genomes]
rs62423383	1.00[ASN][1000 genomes]
rs62423386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423387	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423388	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423390	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423408	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423409	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423410	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423411	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423413	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423414	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423415	1.00[ASN][1000 genomes]
rs62423416	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423417	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423435	1.00[ASN][1000 genomes]
rs62423458	1.00[ASN][1000 genomes]
rs62423459	1.00[ASN][1000 genomes]
rs62424760	1.00[ASN][1000 genomes]
rs62424761	1.00[ASN][1000 genomes]
rs6907886	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001219	1.00[ASN][1000 genomes]
rs73627667	1.00[ASN][1000 genomes]
rs73779848	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756633	1.00[ASN][1000 genomes]
rs9483319	1.00[ASN][1000 genomes]
rs9493053	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131974400-131992400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:131975200-132008200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:131976000-131996600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:131976200-131996800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:131977000-131997000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:131981800-131992400	Weak transcription	K562	blood
7	chr6:131986800-132009600	Strong transcription	HepG2	liver
8	chr6:131988600-131992400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:131989200-131991200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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