Variant report

Variant	rs6907886
Chromosome Location	chr6:132015729-132015730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132007332..132009041-chr6:132015162..132016904,2	K562	blood:
2	chr6:132015065..132016761-chr6:132065945..132068393,2	K562	blood:
3	chr6:131965455..131967671-chr6:132014535..132016282,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs2066889	1.00[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824194	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366541	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs56708439	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58262979	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58509935	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423377	1.00[ASN][1000 genomes]
rs62423383	1.00[ASN][1000 genomes]
rs62423386	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423387	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423388	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423390	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423408	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423409	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423410	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423411	1.00[ASN][1000 genomes]
rs62423413	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423414	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423415	1.00[ASN][1000 genomes]
rs62423416	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423417	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423435	1.00[ASN][1000 genomes]
rs62423458	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62423459	1.00[ASN][1000 genomes]
rs62424760	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62424761	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73001219	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779848	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756633	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9483319	1.00[ASN][1000 genomes]
rs9493053	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1825552	chr6:132015084-132035688	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131993600-132020600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:131998800-132043000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:131999200-132017600	Weak transcription	Fetal Intestine Large	intestine
5	chr6:131999400-132020600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:132002600-132054400	Weak transcription	K562	blood
7	chr6:132012200-132017400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:132013600-132016200	Enhancers	Primary B cells from cord blood	blood
9	chr6:132014200-132015800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:132014600-132016000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:132014600-132019400	Strong transcription	HepG2	liver
12	chr6:132015200-132018400	Weak transcription	H9 Cell Line	embryonic stem cell

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