Variant report

Variant	rs7756633
Chromosome Location	chr6:132047826-132047827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17060555	0.80[YRI][hapmap]
rs17060618	1.00[YRI][hapmap]
rs2066889	1.00[ASN][1000 genomes]
rs55824194	1.00[ASN][1000 genomes]
rs56366541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs56708439	1.00[ASN][1000 genomes]
rs58262979	1.00[ASN][1000 genomes]
rs58509935	1.00[ASN][1000 genomes]
rs62423377	1.00[ASN][1000 genomes]
rs62423383	1.00[ASN][1000 genomes]
rs62423386	1.00[ASN][1000 genomes]
rs62423387	1.00[ASN][1000 genomes]
rs62423388	1.00[ASN][1000 genomes]
rs62423390	1.00[ASN][1000 genomes]
rs62423408	1.00[ASN][1000 genomes]
rs62423409	1.00[ASN][1000 genomes]
rs62423410	1.00[ASN][1000 genomes]
rs62423411	1.00[ASN][1000 genomes]
rs62423413	1.00[ASN][1000 genomes]
rs62423414	1.00[ASN][1000 genomes]
rs62423415	1.00[ASN][1000 genomes]
rs62423416	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62423417	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62423435	1.00[ASN][1000 genomes]
rs62423458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423459	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62424760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62424761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907886	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73001219	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779848	1.00[ASN][1000 genomes]
rs9483319	1.00[ASN][1000 genomes]
rs9493053	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886669	chr6:131991532-132059074	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131998600-132054000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:132002600-132054400	Weak transcription	K562	blood
3	chr6:132040600-132063200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:132041400-132048600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:132043000-132049800	Weak transcription	Fetal Kidney	kidney
6	chr6:132044200-132055400	Weak transcription	Colonic Mucosa	Colon
7	chr6:132044800-132054400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:132047200-132048000	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:132047200-132048200	ZNF genes & repeats	Liver	Liver
10	chr6:132047400-132048000	ZNF genes & repeats	HepG2	liver
11	chr6:132047400-132048200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr6:132047600-132048400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr6:132047800-132048000	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr6:132047800-132048000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr6:132047800-132049400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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