Variant report

Variant	rs62423377
Chromosome Location	chr6:131959363-131959364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2066889	1.00[ASN][1000 genomes]
rs4053138	1.00[ASN][1000 genomes]
rs55824194	1.00[ASN][1000 genomes]
rs56366541	1.00[ASN][1000 genomes]
rs56381865	1.00[ASN][1000 genomes]
rs56708439	1.00[ASN][1000 genomes]
rs58262979	1.00[ASN][1000 genomes]
rs58509935	1.00[ASN][1000 genomes]
rs62423383	1.00[ASN][1000 genomes]
rs62423386	1.00[ASN][1000 genomes]
rs62423387	1.00[ASN][1000 genomes]
rs62423388	1.00[ASN][1000 genomes]
rs62423390	1.00[ASN][1000 genomes]
rs62423408	1.00[ASN][1000 genomes]
rs62423409	1.00[ASN][1000 genomes]
rs62423410	1.00[ASN][1000 genomes]
rs62423411	1.00[ASN][1000 genomes]
rs62423413	1.00[ASN][1000 genomes]
rs62423414	1.00[ASN][1000 genomes]
rs62423415	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423416	1.00[ASN][1000 genomes]
rs62423417	1.00[ASN][1000 genomes]
rs62423435	1.00[ASN][1000 genomes]
rs62423458	1.00[ASN][1000 genomes]
rs62423459	1.00[ASN][1000 genomes]
rs62424760	1.00[ASN][1000 genomes]
rs62424761	1.00[ASN][1000 genomes]
rs6907886	1.00[ASN][1000 genomes]
rs73001219	1.00[ASN][1000 genomes]
rs73627667	1.00[ASN][1000 genomes]
rs73779848	1.00[ASN][1000 genomes]
rs7742094	1.00[ASN][1000 genomes]
rs7756633	1.00[ASN][1000 genomes]
rs9483319	1.00[ASN][1000 genomes]
rs9493053	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131949800-131983200	Weak transcription	Aorta	Aorta
2	chr6:131950200-131962600	Weak transcription	Small Intestine	intestine
3	chr6:131952600-131973800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:131957400-131961000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:131958400-131959400	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:131958400-131959400	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr6:131958400-131959600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
8	chr6:131958400-131959600	Active TSS	Fetal Kidney	kidney
9	chr6:131958400-131959600	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr6:131958400-131959600	Active TSS	K562	blood
11	chr6:131958400-131960000	Active TSS	Fetal Intestine Small	intestine
12	chr6:131958600-131959600	Active TSS	Fetal Intestine Large	intestine
13	chr6:131959000-131959400	Enhancers	Adipose Nuclei	Adipose
14	chr6:131959000-131959400	Enhancers	Liver	Liver
15	chr6:131959000-131962200	Genic enhancers	HepG2	liver
16	chr6:131959200-131959400	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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