Variant report
| Variant | rs56381865 |
|---|---|
| Chromosome Location | chr6:131879738-131879739 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:131878032..131880646-chr6:131893750..131896365,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118520 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs2066889 | 1.00[ASN][1000 genomes] |
| rs4053138 | 1.00[ASN][1000 genomes] |
| rs55824194 | 1.00[ASN][1000 genomes] |
| rs56366541 | 1.00[ASN][1000 genomes] |
| rs56708439 | 1.00[ASN][1000 genomes] |
| rs58262979 | 1.00[ASN][1000 genomes] |
| rs58509935 | 1.00[ASN][1000 genomes] |
| rs62422529 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62423377 | 1.00[ASN][1000 genomes] |
| rs62423383 | 1.00[ASN][1000 genomes] |
| rs62423386 | 1.00[ASN][1000 genomes] |
| rs62423387 | 1.00[ASN][1000 genomes] |
| rs62423388 | 1.00[ASN][1000 genomes] |
| rs62423390 | 1.00[ASN][1000 genomes] |
| rs62423408 | 1.00[ASN][1000 genomes] |
| rs62423409 | 1.00[ASN][1000 genomes] |
| rs62423410 | 1.00[ASN][1000 genomes] |
| rs62423411 | 1.00[ASN][1000 genomes] |
| rs62423413 | 1.00[ASN][1000 genomes] |
| rs62423414 | 1.00[ASN][1000 genomes] |
| rs62423415 | 1.00[ASN][1000 genomes] |
| rs62423416 | 1.00[ASN][1000 genomes] |
| rs62423417 | 1.00[ASN][1000 genomes] |
| rs62423435 | 1.00[ASN][1000 genomes] |
| rs62423458 | 1.00[ASN][1000 genomes] |
| rs62423459 | 1.00[ASN][1000 genomes] |
| rs62424760 | 1.00[ASN][1000 genomes] |
| rs62424761 | 1.00[ASN][1000 genomes] |
| rs6907886 | 1.00[ASN][1000 genomes] |
| rs73001219 | 1.00[ASN][1000 genomes] |
| rs73627667 | 1.00[ASN][1000 genomes] |
| rs73779848 | 1.00[ASN][1000 genomes] |
| rs7742094 | 1.00[ASN][1000 genomes] |
| rs7756633 | 1.00[ASN][1000 genomes] |
| rs9483319 | 1.00[ASN][1000 genomes] |
| rs9493053 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv515476 | chr6:131615425-132228577 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | esv2829868 | chr6:131729859-131898208 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv886668 | chr6:131814865-131954797 | Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131877600-131880000 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr6:131878400-131891600 | Weak transcription | HepG2 | liver |
| 3 | chr6:131879000-131883200 | Weak transcription | Liver | Liver |
