Variant report

Variant	rs7746374
Chromosome Location	chr6:54814161-54814162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54810051..54812419-chr6:54813190..54815495,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10485136	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1115159	0.82[ASN][1000 genomes]
rs12525787	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662124	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503140	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1503146	0.88[EUR][1000 genomes]
rs1503147	0.88[EUR][1000 genomes]
rs2064432	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141552	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4712081	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6459035	0.88[EUR][1000 genomes]
rs6902245	0.83[EUR][1000 genomes]
rs6902422	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6908170	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922186	0.83[EUR][1000 genomes]
rs6926997	0.83[EUR][1000 genomes]
rs6929930	0.83[EUR][1000 genomes]
rs6939778	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72645372	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7453866	0.82[ASN][1000 genomes]
rs7739399	0.92[ASN][1000 genomes]
rs7744592	0.81[EUR][1000 genomes]
rs9296771	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs932452	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349740	0.82[EUR][1000 genomes]
rs9367597	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367602	0.92[ASN][1000 genomes]
rs9370337	0.80[ASN][1000 genomes]
rs9370344	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9370345	0.82[EUR][1000 genomes]
rs9370350	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9370351	0.92[ASN][1000 genomes]
rs9370352	0.92[ASN][1000 genomes]
rs9382396	0.86[EUR][1000 genomes]
rs9382397	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382398	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382402	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9382403	0.82[EUR][1000 genomes]
rs9382411	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9396006	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396007	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396013	0.91[ASN][1000 genomes]
rs9475068	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475069	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475078	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9475081	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475106	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475107	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs960834	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs960835	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54798800-54815600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:54807400-54818000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54807800-54815200	Weak transcription	NHEK	skin
4	chr6:54809400-54817600	Weak transcription	HMEC	breast
5	chr6:54809600-54814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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