Variant report

Variant	rs9475106
Chromosome Location	chr6:54851455-54851456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10485136	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10948880	0.80[ASN][1000 genomes]
rs1115159	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12525787	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12662124	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs148109	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs1503134	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1503136	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1503147	0.84[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap]
rs1910350	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2064432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2816811	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs4141552	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4588693	0.80[EUR][1000 genomes]
rs4712081	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4712092	0.87[CHB][hapmap]
rs4715492	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6908170	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908568	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6939778	0.87[ASN][1000 genomes]
rs72645372	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7453866	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7739399	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746374	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7764641	0.84[EUR][1000 genomes]
rs7765236	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9296771	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs932452	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357840	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs9367597	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9367602	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367608	0.88[CHB][hapmap]
rs9370332	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs9370333	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs9370350	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370351	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370352	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382397	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9382398	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9382403	0.80[CEU][hapmap]
rs9382404	0.84[EUR][1000 genomes]
rs9382407	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9382408	0.84[EUR][1000 genomes]
rs9382411	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382442	0.86[CHB][hapmap]
rs9396006	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9396007	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396011	0.84[EUR][1000 genomes]
rs9396013	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396036	0.93[CHB][hapmap]
rs9475068	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475069	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9475081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475107	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960835	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv20291	chr6:54846098-54851665	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv3474002	chr6:54846245-54851547	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3474003	chr6:54846291-54851530	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv603141	chr6:54848142-54852462	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv603147	chr6:54848265-54852462	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links