Variant report

Variant	rs9382408
Chromosome Location	chr6:54836984-54836985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10948879	0.81[ASN][1000 genomes]
rs1108887	0.94[ASN][1000 genomes]
rs1108888	0.94[ASN][1000 genomes]
rs12662124	0.81[AMR][1000 genomes]
rs1354288	0.94[ASN][1000 genomes]
rs1393775	0.94[ASN][1000 genomes]
rs1393776	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1503134	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1503136	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503140	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503146	0.81[AMR][1000 genomes]
rs1503147	0.81[AMR][1000 genomes]
rs1580891	0.94[ASN][1000 genomes]
rs1580892	0.94[ASN][1000 genomes]
rs1910350	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2134537	0.94[ASN][1000 genomes]
rs2134538	0.94[ASN][1000 genomes]
rs2174115	0.94[ASN][1000 genomes]
rs3125261	0.93[ASN][1000 genomes]
rs3125263	0.94[ASN][1000 genomes]
rs3125267	0.94[ASN][1000 genomes]
rs3125269	0.94[ASN][1000 genomes]
rs4141552	0.80[AMR][1000 genomes]
rs4712083	0.94[ASN][1000 genomes]
rs4715492	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6902245	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6902422	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922186	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926997	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6929930	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7739399	0.82[EUR][1000 genomes]
rs7744592	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7764641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765236	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs932452	0.81[AMR][1000 genomes]
rs9349740	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357822	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9370344	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9370345	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370351	0.83[EUR][1000 genomes]
rs9382402	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382403	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382404	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9382407	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396007	0.81[AMR][1000 genomes]
rs9396011	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475078	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475081	0.81[AMR][1000 genomes]
rs9475106	0.84[EUR][1000 genomes]
rs9475107	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs960834	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs960835	0.82[AMR][1000 genomes]
rs980821	0.94[ASN][1000 genomes]
rs980822	0.94[ASN][1000 genomes]
rs988913	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54836400-54837000	Enhancers	NHEK	skin
2	chr6:54836800-54837000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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