Variant report

Variant	rs3125263
Chromosome Location	chr6:54853970-54853971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10456176	0.81[CHB][hapmap]
rs10948866	0.88[CHB][hapmap]
rs10948879	0.86[ASN][1000 genomes]
rs1108887	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108888	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115159	0.82[CHB][hapmap]
rs1155749	0.83[CHB][hapmap]
rs12192659	0.81[CHB][hapmap]
rs1354288	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1393776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1472679	0.88[CHB][hapmap]
rs1503134	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1503136	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1503140	0.95[ASN][1000 genomes]
rs1503147	0.82[CHB][hapmap]
rs1580891	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1580892	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171224	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs181155	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1910350	1.00[ASN][1000 genomes]
rs1963697	1.00[CHB][hapmap]
rs2134537	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2134538	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174115	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179786	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2207025	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2207026	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs239781	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs239783	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs239790	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs239792	0.84[ASN][1000 genomes]
rs239796	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs239801	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs239813	0.84[ASN][1000 genomes]
rs239837	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2816812	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3125260	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3125261	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3125267	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125269	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141552	0.82[CHB][hapmap]
rs4712083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715492	0.98[ASN][1000 genomes]
rs6459034	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6902245	0.95[ASN][1000 genomes]
rs6902422	0.95[ASN][1000 genomes]
rs6918402	0.81[CHB][hapmap]
rs6922186	0.95[ASN][1000 genomes]
rs6926997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6929930	0.95[ASN][1000 genomes]
rs6937970	0.81[CHB][hapmap]
rs7453866	0.83[CHB][hapmap]
rs7741915	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7744592	0.83[ASN][1000 genomes]
rs7761336	0.82[CHB][hapmap]
rs7764641	0.98[ASN][1000 genomes]
rs7765236	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7765721	0.87[CHB][hapmap]
rs7766546	0.83[EUR][1000 genomes]
rs924712	0.83[CHB][hapmap]
rs931766	0.88[CHB][hapmap]
rs9349740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9370344	0.89[ASN][1000 genomes]
rs9370345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9370351	0.84[AFR][1000 genomes]
rs9382402	0.92[ASN][1000 genomes]
rs9382403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9382404	0.98[ASN][1000 genomes]
rs9382407	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9382408	0.94[ASN][1000 genomes]
rs9396011	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9475078	0.95[ASN][1000 genomes]
rs960834	0.93[ASN][1000 genomes]
rs971526	0.88[CHB][hapmap]
rs973205	0.88[CHB][hapmap]
rs980821	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980822	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:54852600-54855000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:54852800-54854000	Enhancers	Fetal Intestine Small	intestine
5	chr6:54853000-54857000	Weak transcription	HMEC	breast
6	chr6:54853200-54854600	Weak transcription	Stomach Mucosa	stomach
7	chr6:54853400-54858400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:54853800-54854400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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