Variant report

Variant	rs9396011
Chromosome Location	chr6:54836739-54836740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10456176	0.81[CHB][hapmap]
rs10485136	0.95[CEU][hapmap];0.83[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10948866	0.88[CHB][hapmap]
rs10948879	0.84[ASN][1000 genomes]
rs1108887	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1108888	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1115159	0.82[CHB][hapmap]
rs1155749	0.82[CHB][hapmap]
rs12192659	0.81[CHB][hapmap]
rs1354288	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1393775	0.98[ASN][1000 genomes]
rs1393776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472679	0.88[CHB][hapmap]
rs1503134	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503136	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503140	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503147	0.95[CEU][hapmap];0.82[CHB][hapmap]
rs1580891	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1580892	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs171224	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs181155	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1910350	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1963697	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs2134537	0.98[ASN][1000 genomes]
rs2134538	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2174115	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2179786	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2207025	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2207026	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs239781	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs239783	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs239789	0.80[YRI][hapmap]
rs239790	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs239792	0.82[ASN][1000 genomes]
rs239796	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs239801	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs239802	0.80[YRI][hapmap]
rs239813	0.82[ASN][1000 genomes]
rs239837	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2746440	0.80[YRI][hapmap]
rs2816810	0.82[JPT][hapmap]
rs2816812	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3125261	0.96[ASN][1000 genomes]
rs3125263	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3125267	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3125269	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4141552	0.83[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap]
rs4712081	0.90[CEU][hapmap];0.89[CHD][hapmap]
rs4712083	0.98[ASN][1000 genomes]
rs4715492	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459034	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6902245	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902422	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6918402	0.81[CHB][hapmap]
rs6922186	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929930	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937970	0.81[CHB][hapmap]
rs7453866	0.82[CHB][hapmap]
rs7739399	0.82[EUR][1000 genomes]
rs7741915	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7744592	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7761336	0.82[CHB][hapmap]
rs7764641	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765236	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765721	0.87[CHB][hapmap]
rs924712	0.82[CHB][hapmap]
rs931766	0.88[CHB][hapmap]
rs932452	0.90[CEU][hapmap]
rs9349740	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357822	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9367597	0.90[CEU][hapmap]
rs9370344	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370345	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9370351	0.83[EUR][1000 genomes]
rs9382402	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382404	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382407	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382408	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9396006	0.89[CEU][hapmap]
rs9475078	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475106	0.84[EUR][1000 genomes]
rs9475107	0.83[EUR][1000 genomes]
rs960834	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs971526	0.88[CHB][hapmap]
rs973205	0.88[CHB][hapmap]
rs980821	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs980822	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs988913	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54835800-54836800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:54836400-54837000	Enhancers	NHEK	skin

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