Variant report

Variant	rs9357822
Chromosome Location	chr6:54827139-54827140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10485136	0.81[EUR][1000 genomes]
rs1393776	0.90[EUR][1000 genomes]
rs1503134	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503136	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1503140	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1503146	0.82[EUR][1000 genomes]
rs1503147	0.82[EUR][1000 genomes]
rs1910350	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4141552	0.82[EUR][1000 genomes]
rs4715492	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6459035	0.81[EUR][1000 genomes]
rs6902245	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6902422	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6908170	0.81[EUR][1000 genomes]
rs6922186	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6926997	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6929930	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7744592	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7764641	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7765236	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9349740	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9370344	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9370345	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9382396	0.81[EUR][1000 genomes]
rs9382402	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9382403	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9382404	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9382407	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9382408	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9396007	0.80[EUR][1000 genomes]
rs9396011	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9475078	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9475081	0.81[EUR][1000 genomes]
rs960834	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs960835	0.81[EUR][1000 genomes]
rs988913	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54827000-54827200	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links