Variant report

Variant	rs960834
Chromosome Location	chr6:54823431-54823432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10456176	0.87[CHB][hapmap]
rs10485136	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs10948866	0.87[CHB][hapmap]
rs1108887	0.93[ASN][1000 genomes]
rs1108888	0.93[ASN][1000 genomes]
rs1115159	0.82[CHB][hapmap]
rs1155749	0.87[CHB][hapmap]
rs12192659	0.87[CHB][hapmap]
rs12525787	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12662124	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1354288	0.93[ASN][1000 genomes]
rs1393775	0.93[ASN][1000 genomes]
rs1393776	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472679	0.87[CHB][hapmap]
rs148109	0.81[CHB][hapmap]
rs1503134	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1503136	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1503140	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503146	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1503147	0.90[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1580891	0.93[ASN][1000 genomes]
rs1580892	0.93[ASN][1000 genomes]
rs171224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs181155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1910350	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1963697	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs2064432	0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2134537	0.93[ASN][1000 genomes]
rs2134538	0.93[ASN][1000 genomes]
rs2174115	0.93[ASN][1000 genomes]
rs2179786	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2207025	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2207026	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs239781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs239783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs239790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs239792	0.81[ASN][1000 genomes]
rs239796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs239801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs239813	0.81[ASN][1000 genomes]
rs239837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2816811	0.82[CHB][hapmap]
rs2816812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3125261	0.91[ASN][1000 genomes]
rs3125263	0.93[ASN][1000 genomes]
rs3125267	0.93[ASN][1000 genomes]
rs3125269	0.93[ASN][1000 genomes]
rs4141552	0.90[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4712081	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs4712083	0.93[ASN][1000 genomes]
rs4715492	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6459034	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6459035	0.83[EUR][1000 genomes]
rs6902245	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902422	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908170	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6918402	0.87[CHB][hapmap]
rs6922186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926997	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929930	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937970	0.87[CHB][hapmap]
rs6939778	0.81[EUR][1000 genomes]
rs72645372	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7453866	0.82[CHB][hapmap]
rs7741915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7744592	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7746374	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7761336	0.87[CHB][hapmap]
rs7764641	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765236	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7765721	0.93[CHB][hapmap]
rs924712	0.87[CHB][hapmap]
rs9296771	0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs931766	0.87[CHB][hapmap]
rs932452	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9349740	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357822	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9367597	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9370344	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370345	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382396	0.82[EUR][1000 genomes]
rs9382397	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9382398	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9382402	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9382403	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9382404	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382407	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9382408	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9396006	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9396007	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9396011	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475068	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9475069	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9475078	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9475081	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9475107	0.82[AMR][1000 genomes]
rs960835	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs971526	0.87[CHB][hapmap]
rs973205	0.87[CHB][hapmap]
rs980821	0.93[ASN][1000 genomes]
rs980822	0.93[ASN][1000 genomes]
rs988913	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54821800-54824800	Enhancers	Dnd41	blood
2	chr6:54823000-54823800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links