Variant report

Variant	rs9382411
Chromosome Location	chr6:54848368-54848369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10485136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10948880	0.80[ASN][1000 genomes]
rs1115159	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12525787	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12662124	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs148109	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs1503136	0.82[EUR][1000 genomes]
rs1503147	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1910350	0.84[EUR][1000 genomes]
rs2064432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2179786	0.81[CHB][hapmap]
rs2816811	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs4141552	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs4712081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6908170	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6908568	0.80[ASN][1000 genomes]
rs6939778	0.87[ASN][1000 genomes]
rs72645372	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7453866	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7739399	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746374	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9296771	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs932452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9357840	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9367597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9367602	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370332	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs9370333	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9370350	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9370351	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9370352	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382397	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9382398	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9396006	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9396007	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9396013	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396036	0.88[CHB][hapmap]
rs9475068	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9475069	0.87[ASN][1000 genomes]
rs9475081	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9475106	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475107	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960835	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv603134	chr6:54841672-54851340	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv20291	chr6:54846098-54851665	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3474002	chr6:54846245-54851547	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3474003	chr6:54846291-54851530	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3474001	chr6:54846368-54851443	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv514361	chr6:54846369-54848773	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv499725	chr6:54846381-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv3474004	chr6:54846382-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv603135	chr6:54848142-54849779	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv603136	chr6:54848142-54849908	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv603137	chr6:54848142-54850370	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv603138	chr6:54848142-54850396	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv603139	chr6:54848142-54851038	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv603140	chr6:54848142-54851340	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv603141	chr6:54848142-54852462	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv603142	chr6:54848265-54849908	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv603143	chr6:54848265-54850139	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv603144	chr6:54848265-54850396	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv603145	chr6:54848265-54850977	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv603146	chr6:54848265-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv603147	chr6:54848265-54852462	Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv603148	chr6:54848317-54849908	Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv603149	chr6:54848317-54850396	Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv603150	chr6:54848317-54851038	Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv603151	chr6:54848317-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links