Variant report

Variant	rs7758596
Chromosome Location	chr6:114025253-114025254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10872103	0.85[EUR][1000 genomes]
rs11153435	0.85[EUR][1000 genomes]
rs11153436	0.85[EUR][1000 genomes]
rs11153437	0.84[EUR][1000 genomes]
rs11153438	0.84[EUR][1000 genomes]
rs12192583	0.85[EUR][1000 genomes]
rs12198110	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12205842	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12213809	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72954665	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs773682	0.83[CHD][hapmap]
rs7773975	0.84[EUR][1000 genomes]
rs9320468	0.85[EUR][1000 genomes]
rs9481386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954620	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114024000-114029800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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