Variant report

Variant	rs7773975
Chromosome Location	chr6:114031235-114031236
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10457269	0.91[AMR][1000 genomes]
rs10872103	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10872104	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11153435	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153436	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153437	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153438	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12192583	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12198110	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12205842	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12213809	0.85[EUR][1000 genomes]
rs1880964	0.98[ASN][1000 genomes]
rs72954665	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7758596	0.84[EUR][1000 genomes]
rs9320468	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9320470	0.91[AMR][1000 genomes]
rs9372373	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374423	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9374425	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9387173	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400662	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400663	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400664	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400665	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9481386	0.81[EUR][1000 genomes]
rs967691	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3334553	chr6:114031216-114031379	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:114029200-114031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:114030200-114031400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:114030200-114040000	Weak transcription	Stomach Mucosa	stomach
5	chr6:114031000-114031600	Enhancers	Fetal Intestine Large	intestine
6	chr6:114031000-114031800	Enhancers	Fetal Intestine Small	intestine
7	chr6:114031000-114032000	Enhancers	Fetal Brain Male	brain
8	chr6:114031200-114031600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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