Variant report

Variant	rs12198110
Chromosome Location	chr6:114022711-114022712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457269	0.85[AMR][1000 genomes]
rs10872103	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10872104	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11153435	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11153436	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11153437	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11153438	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12192583	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12205842	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12213809	0.86[EUR][1000 genomes]
rs72954665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7758596	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7773975	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9320468	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9320470	0.85[AMR][1000 genomes]
rs9372373	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9374423	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9374425	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9387173	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9400662	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9400663	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9400664	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9400665	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9481386	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs967691	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
3	chr6:114021200-114023000	Weak transcription	HepG2	liver
4	chr6:114022000-114024000	Enhancers	Stomach Mucosa	stomach
5	chr6:114022600-114023800	Weak transcription	Pancreas	Pancrea

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