Variant report

Variant	rs9481386
Chromosome Location	chr6:114022813-114022814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10872103	0.82[EUR][1000 genomes]
rs11153435	0.82[EUR][1000 genomes]
rs11153436	0.82[EUR][1000 genomes]
rs11153437	0.81[EUR][1000 genomes]
rs11153438	0.81[EUR][1000 genomes]
rs12192583	0.82[EUR][1000 genomes]
rs12198110	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12205842	0.82[EUR][1000 genomes]
rs12213809	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72954665	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7758596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7773975	0.81[EUR][1000 genomes]
rs9320468	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114015800-114023000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:114016200-114023000	Weak transcription	Fetal Lung	lung
3	chr6:114021200-114023000	Weak transcription	HepG2	liver
4	chr6:114022000-114024000	Enhancers	Stomach Mucosa	stomach
5	chr6:114022600-114023800	Weak transcription	Pancreas	Pancrea
6	chr6:114022800-114023200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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