Variant report

Variant	rs9374423
Chromosome Location	chr6:114040348-114040349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457269	0.91[AMR][1000 genomes]
rs10872103	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10872104	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11153435	0.90[EUR][1000 genomes]
rs11153436	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11153437	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11153438	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12192583	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12198110	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12205842	0.91[EUR][1000 genomes]
rs1880964	0.81[ASN][1000 genomes]
rs72954665	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7758596	0.87[CEU][hapmap];0.89[TSI][hapmap]
rs7773975	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9320468	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9320470	0.91[AMR][1000 genomes]
rs9372373	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9374425	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9387173	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400662	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400663	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9400664	0.90[AMR][1000 genomes]
rs9400665	0.90[AMR][1000 genomes]
rs9481386	0.87[CEU][hapmap]
rs967691	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9374423	GTF3C6	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114037000-114040400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:114039600-114040400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:114039600-114040400	Enhancers	Fetal Intestine Small	intestine
4	chr6:114039600-114040600	Enhancers	GM12878-XiMat	blood
5	chr6:114039600-114041200	Enhancers	HMEC	breast
6	chr6:114039800-114041400	Enhancers	Hela-S3	cervix
7	chr6:114039800-114041400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:114039800-114042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:114040000-114040800	Enhancers	Stomach Mucosa	stomach
10	chr6:114040000-114041200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:114040000-114041200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:114040000-114041400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:114040200-114040400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr6:114040200-114040600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:114040200-114040600	Enhancers	HepG2	liver
16	chr6:114040200-114040600	Enhancers	Osteobl	bone
17	chr6:114040200-114041400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:114040200-114041400	Enhancers	NHDF-Ad	bronchial
19	chr6:114040200-114044400	Weak transcription	Rectal Mucosa Donor 31	rectum

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