Variant report

Variant	rs9400665
Chromosome Location	chr6:114055979-114055980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114048463..114050659-chr6:114053494..114056179,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10457269	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10872103	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10872104	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10872105	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11153435	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11153436	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11153437	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11153438	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12192583	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12198110	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12205842	0.84[EUR][1000 genomes]
rs2463311	0.81[AMR][1000 genomes]
rs72954665	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7773975	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9320468	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9320470	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372373	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9374423	0.90[AMR][1000 genomes]
rs9374425	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9387173	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9400662	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9400663	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9400664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967691	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114053600-114056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:114054000-114056000	Weak transcription	Right Atrium	heart
3	chr6:114054000-114056200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:114054000-114063200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:114054200-114056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:114054200-114056000	Weak transcription	Psoas Muscle	Psoas
7	chr6:114054200-114056000	Weak transcription	NH-A	brain
8	chr6:114054200-114056000	Weak transcription	Osteobl	bone
9	chr6:114054200-114056200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:114054200-114056200	Weak transcription	Stomach Mucosa	stomach
11	chr6:114054200-114058200	Weak transcription	HepG2	liver
12	chr6:114054400-114056000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:114054400-114056200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:114054400-114056200	Weak transcription	HSMM	muscle
15	chr6:114054400-114056400	Weak transcription	HSMMtube	muscle
16	chr6:114054800-114056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:114054800-114056000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:114054800-114056000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:114054800-114056000	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:114055000-114056000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:114055000-114056000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:114055000-114056000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:114055000-114056000	Weak transcription	NHDF-Ad	bronchial
24	chr6:114055200-114056000	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:114055200-114056200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:114055800-114057000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:114055800-114057600	Enhancers	Primary monocytes fromperipheralblood	blood

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