Variant report

Variant	rs7758990
Chromosome Location	chr6:144871728-144871729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144867913..144870322-chr6:144871026..144873651,2	K562	blood:
2	chr6:144865762..144868928-chr6:144869239..144873744,4	MCF-7	breast:
3	chr6:144871649..144873268-chr6:144877006..144879337,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28493305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4428521	0.95[AFR][1000 genomes]
rs6923086	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321982	0.84[AFR][1000 genomes]
rs9496997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497007	1.00[AFR][1000 genomes]
rs9497017	0.86[AFR][1000 genomes]
rs9497018	0.86[AFR][1000 genomes]
rs9497020	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
3	chr6:144815200-144881000	Weak transcription	NHEK	skin
4	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
6	chr6:144837200-144880800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:144850200-144877400	Weak transcription	HMEC	breast
8	chr6:144850400-144903200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:144850400-144903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:144850400-144904200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:144850600-144881600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:144853600-144896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:144854400-144873400	Weak transcription	Pancreas	Pancrea
14	chr6:144854600-144881200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:144856000-144875800	Weak transcription	Fetal Heart	heart
16	chr6:144857200-144904000	Weak transcription	Psoas Muscle	Psoas
17	chr6:144858200-144887800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr6:144858600-144879200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:144858600-144879400	Strong transcription	HepG2	liver
20	chr6:144859600-144878600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:144860200-144879200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:144861000-144878400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:144861200-144885000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:144861800-144876400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:144862200-144873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:144862400-144872400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:144864000-144876600	Weak transcription	Gastric	stomach
28	chr6:144864200-144872000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:144864400-144878800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:144864600-144872000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:144864800-144874000	Weak transcription	Lung	lung
32	chr6:144864800-144874200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:144864800-144876400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr6:144864800-144876400	Weak transcription	Esophagus	oesophagus
35	chr6:144864800-144885200	Weak transcription	Colonic Mucosa	Colon
36	chr6:144864800-144885800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr6:144864800-144899000	Weak transcription	Small Intestine	intestine
38	chr6:144865000-144879600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr6:144865200-144872200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:144866200-144875000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:144866200-144881600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:144867000-144878600	Weak transcription	NHLF	lung
43	chr6:144867400-144872400	Weak transcription	Placenta	Placenta
44	chr6:144867400-144903800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:144868200-144874000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:144868200-144879600	Strong transcription	HUVEC	blood vessel
47	chr6:144868600-144875800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:144869000-144879800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:144869400-144873000	Strong transcription	Fetal Muscle Leg	muscle
50	chr6:144869400-144879000	Strong transcription	Fetal Thymus	thymus

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