Variant report

Variant	rs9497017
Chromosome Location	chr6:144928463-144928464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080939	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs4428521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923086	1.00[YRI][hapmap]
rs73778367	1.00[AMR][1000 genomes]
rs7742257	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7758990	0.86[AFR][1000 genomes]
rs9321982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484893	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496997	1.00[YRI][hapmap]
rs9496999	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497000	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497001	1.00[YRI][hapmap]
rs9497002	0.86[AFR][1000 genomes]
rs9497007	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497018	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497026	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497035	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497040	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
4	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
7	chr6:144904800-144929000	Weak transcription	Left Ventricle	heart
8	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
10	chr6:144909400-144931000	Weak transcription	Aorta	Aorta
11	chr6:144914800-144929400	Weak transcription	Fetal Thymus	thymus
12	chr6:144914800-144937800	Weak transcription	HSMM	muscle
13	chr6:144914800-144960000	Weak transcription	Lung	lung
14	chr6:144915000-144934400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:144921000-144928800	Weak transcription	HepG2	liver
16	chr6:144922000-144928800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:144922000-144929000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:144922200-144938400	Weak transcription	Liver	Liver
19	chr6:144922400-144929000	Weak transcription	Adipose Nuclei	Adipose
20	chr6:144922400-144929400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:144922600-144928800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:144922600-144929800	Weak transcription	Fetal Lung	lung
23	chr6:144922600-144938600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:144922800-144929000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:144922800-144939000	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:144923000-144928800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:144923000-144929000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:144923000-144938000	Weak transcription	NHDF-Ad	bronchial
29	chr6:144923200-144928800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:144923600-144929000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:144924000-144929600	Weak transcription	Thymus	Thymus
32	chr6:144924000-144931600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:144924600-144928800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:144924600-144929200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:144924800-144928600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:144924800-144934600	Weak transcription	GM12878-XiMat	blood
37	chr6:144925000-144929400	Weak transcription	Primary T cells from cord blood	blood
38	chr6:144925200-144928800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:144925400-144928600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr6:144925600-144928800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:144926200-144929000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:144926400-144930600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:144927000-144929000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:144927200-144929400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:144927400-144931000	Strong transcription	Primary B cells from cord blood	blood
46	chr6:144927600-144928800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:144927600-144928800	Weak transcription	Fetal Heart	heart
48	chr6:144927600-144929200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:144927600-144929400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:144927600-144932200	Weak transcription	Stomach Smooth Muscle	stomach

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