Variant report

Variant	rs9484893
Chromosome Location	chr6:144976318-144976319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144968706..144970963-chr6:144974805..144976323,2	MCF-7	breast:
2	chr6:144971392..144973828-chr6:144974911..144976890,2	MCF-7	breast:
3	chr6:144975553..144978023-chr6:144984205..144986983,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10080939	0.92[YRI][hapmap]
rs4428521	1.00[AMR][1000 genomes]
rs6923086	1.00[YRI][hapmap]
rs73778367	1.00[AMR][1000 genomes]
rs7742257	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9321982	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496997	1.00[YRI][hapmap]
rs9496999	1.00[YRI][hapmap]
rs9497000	1.00[YRI][hapmap]
rs9497001	1.00[YRI][hapmap]
rs9497007	1.00[AMR][1000 genomes]
rs9497017	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497018	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497020	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497026	0.92[YRI][hapmap]
rs9497035	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497040	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144949200-144980200	Weak transcription	Fetal Thymus	thymus
2	chr6:144951800-144977600	Weak transcription	Dnd41	blood
3	chr6:144961400-144978600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:144962800-144980200	Weak transcription	Ovary	ovary
5	chr6:144965600-144982400	Weak transcription	HSMM	muscle
6	chr6:144967000-144978600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:144967200-144982000	Weak transcription	HSMMtube	muscle
8	chr6:144967800-144980400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:144968200-144982000	Weak transcription	Brain Germinal Matrix	brain
10	chr6:144969400-144978800	Weak transcription	Pancreas	Pancrea
11	chr6:144970400-144976400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:144971800-144978800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:144973200-144976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:144973200-144976600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:144973200-144976800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:144973600-144978800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:144973600-144980400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:144973600-144980400	Weak transcription	Colonic Mucosa	Colon
19	chr6:144974000-144980200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:144974200-144976600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:144974200-144977000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:144974800-144978400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:144975000-144976600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:144975000-144976600	Enhancers	Liver	Liver
25	chr6:144975000-144976600	Enhancers	Fetal Lung	lung
26	chr6:144975000-144976600	Enhancers	NHDF-Ad	bronchial
27	chr6:144975000-144978800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:144975000-144978800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:144975200-144976600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:144975200-144977400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:144975200-144978800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:144975400-144976800	Enhancers	A549	lung
33	chr6:144975400-144977200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:144975400-144978400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:144975400-144978600	Weak transcription	NH-A	brain
36	chr6:144975400-144980200	Weak transcription	Stomach Mucosa	stomach
37	chr6:144975400-144980400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr6:144975600-144977600	Enhancers	HepG2	liver
39	chr6:144975600-144978600	Weak transcription	Small Intestine	intestine
40	chr6:144975600-144978800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr6:144975600-144979800	Weak transcription	Primary T cells from cord blood	blood
42	chr6:144975600-144980000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:144975600-144980000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:144975600-144980200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:144975600-144980400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:144975600-144980400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:144975600-144981000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:144975800-144978400	Weak transcription	Fetal Intestine Small	intestine
49	chr6:144975800-144978600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:144975800-144979200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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