Variant report

Variant	rs9497040
Chromosome Location	chr6:144995830-144995831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs7742257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9321982	0.89[AFR][1000 genomes]
rs9484893	0.96[AFR][1000 genomes]
rs9497017	0.87[AFR][1000 genomes]
rs9497018	0.87[AFR][1000 genomes]
rs9497020	0.87[AFR][1000 genomes]
rs9497026	0.82[AFR][1000 genomes]
rs9497035	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
2	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
3	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:144982600-144996200	Weak transcription	HSMM	muscle
5	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
6	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
7	chr6:144984800-144996200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:144985000-145004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:144986200-145002000	Weak transcription	Small Intestine	intestine
10	chr6:144991000-144996200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:144993000-144996200	Weak transcription	Osteobl	bone
12	chr6:144993000-145000800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:144994800-144996400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:144995000-144999600	Weak transcription	HepG2	liver
15	chr6:144995400-144996000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
16	chr6:144995400-144996000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:144995400-144996200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:144995400-144996200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:144995400-144996400	Weak transcription	Left Ventricle	heart
20	chr6:144995400-145002000	Weak transcription	Primary T cells from cord blood	blood
21	chr6:144995600-144996000	Enhancers	Dnd41	blood
22	chr6:144995600-144997000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:144995600-144997000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:144995600-144997000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:144995600-144998400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:144995800-144996200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:144995800-144997000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:144995800-145001800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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