Variant report

Variant	rs9497018
Chromosome Location	chr6:144930603-144930604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144924380..144926238-chr6:144929068..144931608,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080939	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs4428521	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923086	1.00[YRI][hapmap]
rs73778367	1.00[AMR][1000 genomes]
rs7742257	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7758990	0.86[AFR][1000 genomes]
rs9321982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484893	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496997	1.00[YRI][hapmap]
rs9496999	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497000	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497001	1.00[YRI][hapmap]
rs9497002	0.86[AFR][1000 genomes]
rs9497007	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497017	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497020	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497026	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs9497035	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497040	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144881800-144937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:144885800-144943400	Weak transcription	Ovary	ovary
3	chr6:144899600-144931800	Weak transcription	Esophagus	oesophagus
4	chr6:144904400-144931600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144904400-144931800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
7	chr6:144904800-144935400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
9	chr6:144909400-144931000	Weak transcription	Aorta	Aorta
10	chr6:144914800-144937800	Weak transcription	HSMM	muscle
11	chr6:144914800-144960000	Weak transcription	Lung	lung
12	chr6:144915000-144934400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:144922200-144938400	Weak transcription	Liver	Liver
14	chr6:144922600-144938600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:144922800-144939000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:144923000-144938000	Weak transcription	NHDF-Ad	bronchial
17	chr6:144924000-144931600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:144924800-144934600	Weak transcription	GM12878-XiMat	blood
19	chr6:144927400-144931000	Strong transcription	Primary B cells from cord blood	blood
20	chr6:144927600-144932200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:144928200-144934600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:144928800-144930800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr6:144928800-144930800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:144928800-144931000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:144929600-144932200	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:144929600-144932200	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:144929600-144932600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:144929600-144955200	Weak transcription	HepG2	liver
29	chr6:144929800-144931200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:144929800-144932200	Active TSS	H1 Cell Line	embryonic stem cell
31	chr6:144929800-144938400	Weak transcription	Adipose Nuclei	Adipose
32	chr6:144929800-144945600	Weak transcription	Left Ventricle	heart
33	chr6:144930000-144932000	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr6:144930000-144932000	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr6:144930000-144943800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:144930000-144945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
38	chr6:144930200-144931800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:144930200-144938000	Weak transcription	Fetal Heart	heart
40	chr6:144930200-144940800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:144930400-144930800	Active TSS	H9 Cell Line	embryonic stem cell
42	chr6:144930400-144932000	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr6:144930400-144933400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:144930600-144931600	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:144930600-144932000	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links