Variant report

Variant	rs6923086
Chromosome Location	chr6:144841910-144841911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144841093..144843197-chr6:144864729..144866619,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10080939	0.91[YRI][hapmap]
rs28493305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742257	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs7758990	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484893	1.00[YRI][hapmap]
rs9496977	0.94[MKK][hapmap]
rs9496997	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496999	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497000	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497001	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497007	0.82[AFR][1000 genomes]
rs9497017	1.00[YRI][hapmap]
rs9497018	1.00[YRI][hapmap]
rs9497020	1.00[YRI][hapmap]
rs9497026	0.91[YRI][hapmap]
rs9497035	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144795800-144849800	Weak transcription	HMEC	breast
2	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:144807400-144904000	Weak transcription	Brain Substantia Nigra	brain
4	chr6:144812400-144844800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:144812400-144881000	Weak transcription	Stomach Mucosa	stomach
6	chr6:144812600-144849600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:144812600-144849600	Weak transcription	NH-A	brain
8	chr6:144812600-144869800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:144813400-144850000	Weak transcription	Colonic Mucosa	Colon
10	chr6:144815000-144855400	Weak transcription	Psoas Muscle	Psoas
11	chr6:144815200-144881000	Weak transcription	NHEK	skin
12	chr6:144816600-144881400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:144821000-144844200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:144821200-144850000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:144821200-144861000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:144827200-144857200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:144829000-144849800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:144829200-144849600	Weak transcription	Right Ventricle	heart
19	chr6:144829200-144849800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:144829600-144849800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:144829800-144849200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:144829800-144849600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:144829800-144849600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:144829800-144849600	Weak transcription	Spleen	Spleen
25	chr6:144829800-144849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:144829800-144850000	Weak transcription	Esophagus	oesophagus
27	chr6:144829800-144854200	Weak transcription	Gastric	stomach
28	chr6:144829800-144863800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:144831400-144849200	Weak transcription	Fetal Heart	heart
30	chr6:144831400-144879000	Strong transcription	Primary B cells from cord blood	blood
31	chr6:144831600-144853200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:144831800-144857000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:144832000-144844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:144832200-144856800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:144832400-144862200	Weak transcription	Small Intestine	intestine
36	chr6:144833400-144842200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:144833400-144845600	Strong transcription	Fetal Thymus	thymus
38	chr6:144833400-144849600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:144833800-144846200	Strong transcription	HepG2	liver
40	chr6:144833800-144857000	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:144833800-144857200	Strong transcription	Primary T cells from cord blood	blood
42	chr6:144833800-144868200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:144834000-144846600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:144834200-144844000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:144834600-144849600	Weak transcription	NHLF	lung
46	chr6:144834800-144842000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:144834800-144848400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:144835000-144846000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:144835000-144856400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:144835800-144849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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