Variant report

Variant	rs7760742
Chromosome Location	chr6:121432111-121432112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10214599	0.83[ASW][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap]
rs1273710	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1273712	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273723	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1273729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273749	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs1273750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1273754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1273770	0.92[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap]
rs1290677	1.00[ASN][1000 genomes]
rs1314810	0.97[ASN][1000 genomes]
rs1632545	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083119	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.95[ASN][1000 genomes]
rs17083169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2088834	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs218864	0.95[ASN][1000 genomes]
rs218865	0.95[ASN][1000 genomes]
rs218866	0.95[ASN][1000 genomes]
rs2651528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2797954	0.97[ASN][1000 genomes]
rs394714	0.95[ASN][1000 genomes]
rs402296	0.95[ASN][1000 genomes]
rs432721	0.95[ASN][1000 genomes]
rs56790796	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57151972	0.97[ASN][1000 genomes]
rs57491732	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57819930	1.00[EUR][1000 genomes]
rs59569667	1.00[EUR][1000 genomes]
rs61449799	1.00[EUR][1000 genomes]
rs6569177	0.81[AFR][1000 genomes]
rs6935956	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73524575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73524585	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526618	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73526664	1.00[EUR][1000 genomes]
rs73536423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73536447	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73538413	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73540503	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73540546	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs785402	0.84[AFR][1000 genomes]
rs9482125	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490141	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9490142	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121390800-121444000	Weak transcription	Ovary	ovary
2	chr6:121403600-121443400	Weak transcription	Left Ventricle	heart
3	chr6:121411800-121443000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:121415400-121442200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:121418000-121442200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:121418200-121436000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:121418200-121443800	Weak transcription	Dnd41	blood
8	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:121418800-121434400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
13	chr6:121429800-121434600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:121432000-121434400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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