Variant report

Variant	rs7762180
Chromosome Location	chr6:164203238-164203239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164202097..164205034-chr6:164205906..164208942,3	K562	blood:
2	chr6:164197060..164200042-chr6:164203079..164205559,3	K562	blood:
3	chr6:164202097..164204783-chr6:164205906..164208764,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1040641	0.92[ASN][1000 genomes]
rs1111705	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13203619	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1885960	0.82[ASN][1000 genomes]
rs2015261	0.89[ASN][1000 genomes]
rs4709760	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4709765	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4709766	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925383	0.88[ASN][1000 genomes]
rs7765258	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180622	0.92[ASN][1000 genomes]
rs880095	0.90[ASN][1000 genomes]
rs9295231	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9295232	0.91[ASN][1000 genomes]
rs9295233	0.83[ASN][1000 genomes]
rs9295234	0.83[ASN][1000 genomes]
rs9346974	0.87[ASN][1000 genomes]
rs9346975	0.83[ASN][1000 genomes]
rs9347790	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9347791	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347792	0.92[ASN][1000 genomes]
rs9347793	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9355439	0.91[ASN][1000 genomes]
rs9355440	0.90[ASN][1000 genomes]
rs9355442	0.81[ASN][1000 genomes]
rs9356148	0.81[ASN][1000 genomes]
rs9356152	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9356153	0.98[ASN][1000 genomes]
rs9356156	0.83[ASN][1000 genomes]
rs9364701	0.94[ASN][1000 genomes]
rs9364703	0.89[ASN][1000 genomes]
rs9365619	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9365620	0.88[ASN][1000 genomes]
rs9456883	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9456885	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
2	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164199400-164203600	Weak transcription	Left Ventricle	heart
4	chr6:164199400-164203600	Weak transcription	Right Ventricle	heart
5	chr6:164200800-164203600	Weak transcription	Spleen	Spleen
6	chr6:164200800-164209200	Weak transcription	Psoas Muscle	Psoas
7	chr6:164201000-164203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:164201000-164204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:164201200-164203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:164202000-164203600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:164202400-164203600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:164202400-164203600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:164202400-164209400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:164202600-164203600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:164202600-164203600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:164202600-164203600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:164202600-164203600	Weak transcription	Fetal Heart	heart
18	chr6:164202600-164203800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:164202600-164203800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:164202600-164209200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:164202800-164203600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:164202800-164203600	Weak transcription	HSMM	muscle
23	chr6:164202800-164208000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:164203200-164204000	Enhancers	HSMMtube	muscle

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