Variant report

Variant	rs9347790
Chromosome Location	chr6:164216240-164216241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164207331..164209190-chr6:164214911..164216421,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1040641	0.91[ASN][1000 genomes]
rs1111705	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13203619	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2015261	0.87[ASN][1000 genomes]
rs4709760	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4709765	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4709766	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6925383	0.85[ASN][1000 genomes]
rs7762180	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765258	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8180622	0.91[ASN][1000 genomes]
rs880095	0.88[ASN][1000 genomes]
rs9295231	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9295232	0.89[ASN][1000 genomes]
rs9295233	0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9295234	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9346974	0.86[ASN][1000 genomes]
rs9346975	0.82[ASN][1000 genomes]
rs9347791	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9347792	0.91[ASN][1000 genomes]
rs9347793	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9355439	0.90[ASN][1000 genomes]
rs9355440	0.88[ASN][1000 genomes]
rs9355442	0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9356152	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9356153	0.99[ASN][1000 genomes]
rs9356156	0.82[ASN][1000 genomes]
rs9364701	0.91[ASN][1000 genomes]
rs9364703	0.87[ASN][1000 genomes]
rs9365619	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9365620	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9456883	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9456885	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9347790	LPA	cis	cerebellum	SCAN
rs9347790	NCRNA00241	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164215200-164217400	Weak transcription	NHDF-Ad	bronchial
2	chr6:164215400-164218000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:164215400-164218000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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