Variant report

Variant	rs9295234
Chromosome Location	chr6:164261320-164261321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1040641	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1111705	0.88[ASN][1000 genomes]
rs13203619	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555229	0.81[CHB][hapmap]
rs2015261	0.91[ASN][1000 genomes]
rs4709760	0.88[ASN][1000 genomes]
rs4709765	0.90[ASN][1000 genomes]
rs4709766	0.90[ASN][1000 genomes]
rs4709773	0.93[ASN][1000 genomes]
rs6925383	0.83[ASN][1000 genomes]
rs7762180	0.83[ASN][1000 genomes]
rs7765258	0.82[ASN][1000 genomes]
rs8180622	0.90[ASN][1000 genomes]
rs880095	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9295231	0.89[ASN][1000 genomes]
rs9295232	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9295233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9346974	0.96[ASN][1000 genomes]
rs9346975	1.00[ASN][1000 genomes]
rs9347790	0.82[ASN][1000 genomes]
rs9347791	0.89[ASN][1000 genomes]
rs9347792	0.90[ASN][1000 genomes]
rs9347793	0.90[ASN][1000 genomes]
rs9347798	0.93[ASN][1000 genomes]
rs9355439	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9355440	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9355442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9356152	0.82[ASN][1000 genomes]
rs9356153	0.82[ASN][1000 genomes]
rs9356156	1.00[ASN][1000 genomes]
rs9364703	0.91[ASN][1000 genomes]
rs9365619	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9365620	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9456885	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164259200-164261600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:164259200-164262400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:164259200-164262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:164259400-164262600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:164259400-164264200	Weak transcription	Fetal Brain Male	brain
6	chr6:164260600-164262600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164260600-164264000	Weak transcription	Fetal Heart	heart
8	chr6:164261200-164261800	Enhancers	Fetal Kidney	kidney

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