Variant report

Variant	rs7764377
Chromosome Location	chr6:145329238-145329239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs7747501	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7775211	0.85[EUR][1000 genomes]
rs9484936	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484937	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484939	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484940	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9484941	0.85[EUR][1000 genomes]
rs9484942	0.85[EUR][1000 genomes]
rs9484943	0.85[EUR][1000 genomes]
rs9484944	0.85[EUR][1000 genomes]
rs9497169	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497170	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497173	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497174	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497175	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497179	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145328400-145339200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145329000-145332800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:145329000-145333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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