Variant report

Variant	rs9484943
Chromosome Location	chr6:145365999-145366000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145365029..145367314-chr6:145367945..145370430,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs6570670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764377	0.85[EUR][1000 genomes]
rs7775211	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484936	1.00[EUR][1000 genomes]
rs9484937	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9484939	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9484940	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9484941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484944	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484946	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9484948	0.82[EUR][1000 genomes]
rs9497169	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9497170	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497173	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497174	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497175	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497178	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9497179	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9497180	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497183	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364000-145366600	Enhancers	Fetal Heart	heart
2	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:145364800-145366400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
5	chr6:145365000-145366000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:145365000-145366000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:145365000-145366000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:145365000-145366400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:145365000-145366800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:145365000-145367800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:145365200-145366000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:145365200-145366000	Enhancers	NHLF	lung
13	chr6:145365200-145366200	Enhancers	Psoas Muscle	Psoas
14	chr6:145365200-145366200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:145365200-145366400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:145365200-145366400	Enhancers	Fetal Stomach	stomach
17	chr6:145365200-145366800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:145365400-145366200	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:145365400-145366400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:145365400-145366400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:145365400-145366400	Enhancers	Osteobl	bone
22	chr6:145365400-145366600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:145365400-145366800	Enhancers	HUVEC	blood vessel
24	chr6:145365600-145366200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:145365600-145366200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:145365600-145366400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:145365600-145366400	Enhancers	Liver	Liver
28	chr6:145365600-145366400	Enhancers	Fetal Lung	lung
29	chr6:145365600-145366400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:145365600-145366800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:145365600-145367000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:145365600-145367000	Enhancers	NH-A	brain
33	chr6:145365800-145366000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:145365800-145366400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:145365800-145366800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr6:145365800-145367000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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