Variant report

Variant	rs9484948
Chromosome Location	chr6:145390993-145390994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10223662	0.82[AFR][1000 genomes]
rs6570670	0.82[EUR][1000 genomes]
rs7775211	0.82[EUR][1000 genomes]
rs9322019	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9484936	0.82[EUR][1000 genomes]
rs9484941	0.82[EUR][1000 genomes]
rs9484942	0.82[EUR][1000 genomes]
rs9484943	0.82[EUR][1000 genomes]
rs9484944	0.82[EUR][1000 genomes]
rs9484946	0.82[EUR][1000 genomes]
rs9497170	0.82[EUR][1000 genomes]
rs9497174	0.82[EUR][1000 genomes]
rs9497175	0.82[EUR][1000 genomes]
rs9497180	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497181	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015500	chr6:145388558-145421503	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145386200-145391800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:145388000-145393000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:145388000-145393200	Enhancers	NHDF-Ad	bronchial
4	chr6:145388200-145393200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:145389400-145391000	Weak transcription	Osteobl	bone
6	chr6:145389400-145391200	Weak transcription	NHLF	lung
7	chr6:145389400-145391400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:145389400-145391800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:145389400-145391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:145389400-145391800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:145389400-145391800	Weak transcription	HMEC	breast
12	chr6:145389600-145391400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:145390600-145393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:145390800-145391800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:145390800-145392800	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links