Variant report

Variant	rs6570670
Chromosome Location	chr6:145367318-145367319
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs7775211	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9322019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484936	0.88[EUR][1000 genomes]
rs9484937	0.90[AMR][1000 genomes]
rs9484939	0.90[AMR][1000 genomes]
rs9484940	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9484941	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484944	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484946	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9484948	0.82[EUR][1000 genomes]
rs9497169	0.90[AMR][1000 genomes]
rs9497170	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9497173	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9497174	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497175	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497178	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9497179	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497180	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497183	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145364400-145367400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:145364800-145368400	Enhancers	NHDF-Ad	bronchial
3	chr6:145365000-145367800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:145366200-145368800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:145366200-145378400	Weak transcription	Psoas Muscle	Psoas
6	chr6:145366400-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:145366400-145372600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:145366400-145374600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:145366600-145368800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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