Variant report
| Variant | rs9497178 |
|---|---|
| Chromosome Location | chr6:145360645-145360646 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145358735..145362713-chr6:145368471..145370231,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs6570670 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7775211 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9322019 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9484937 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9484939 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9484940 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9484941 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9484942 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9484943 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9484944 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9484946 | 0.90[AMR][1000 genomes] |
| rs9497169 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9497170 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9497173 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9497174 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9497175 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9497179 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9497180 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9497181 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv886742 | chr6:145269757-145376903 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145358600-145362000 | Weak transcription | Fetal Heart | heart |
