Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs6570670	0.88[EUR][1000 genomes]
rs7747501	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7764377	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775211	1.00[EUR][1000 genomes]
rs9322019	0.88[EUR][1000 genomes]
rs9484937	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484939	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484940	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9484941	1.00[EUR][1000 genomes]
rs9484942	1.00[EUR][1000 genomes]
rs9484943	1.00[EUR][1000 genomes]
rs9484944	1.00[EUR][1000 genomes]
rs9484946	0.88[EUR][1000 genomes]
rs9484948	0.82[EUR][1000 genomes]
rs9497169	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497170	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9497173	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497174	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497175	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9497180	0.88[EUR][1000 genomes]
rs9497181	0.88[EUR][1000 genomes]
rs9497183	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145328400-145339200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145329000-145332800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:145329000-145333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:145331000-145336800	Weak transcription	HSMM	muscle
5	chr6:145331200-145332000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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