Variant report

Variant	rs7774108
Chromosome Location	chr6:36559985-36559986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:36559862-36560500	GM12878	blood:	n/a	n/a
2	MTA3	chr6:36559856-36560567	GM12878	blood:	n/a	n/a
3	TCF3	chr6:36559890-36560421	GM12878	blood:	n/a	chr6:36560215-36560224
4	PML	chr6:36559959-36560605	GM12878	blood:	n/a	n/a
5	FOXM1	chr6:36559869-36560553	GM12878	blood:	n/a	n/a
6	RUNX3	chr6:36559470-36560538	GM12878	blood:	n/a	n/a
7	POLR2A	chr6:36559975-36560125	MCF-7	breast:	n/a	n/a
8	EP300	chr6:36559940-36560403	GM12878	blood:	n/a	n/a
9	POU2F2	chr6:36559951-36560394	GM12878	blood:	n/a	n/a
10	NFIC	chr6:36559915-36560525	GM12878	blood:	n/a	n/a
11	MEF2A	chr6:36559895-36560427	GM12878	blood:	n/a	n/a
12	RELA	chr6:36559976-36560442	GM19099	blood:	n/a	n/a
13	NFIC	chr6:36559569-36560660	GM12878	blood:	n/a	n/a
14	RUNX3	chr6:36559546-36560511	GM12878	blood:	n/a	n/a
15	TCF3	chr6:36559977-36560124	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:36559879-36560394	Raji	blood:	n/a	n/a
17	IKZF1	chr6:36559905-36560509	GM12878	blood:	n/a	n/a
18	MEF2A	chr6:36559574-36560481	GM12878	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36557597..36560008-chr6:36645990..36649520,4	MCF-7	breast:
2	chr13:41239622..41242900-chr6:36559816..36562746,3	MCF-7	breast:
3	chr6:36409059..36411660-chr6:36558695..36561393,2	MCF-7	breast:
4	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
5	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
6	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
7	chr6:36487455..36494660-chr6:36559051..36563997,8	MCF-7	breast:
8	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
9	chr6:36522635..36525085-chr6:36558432..36560977,2	MCF-7	breast:
10	chr6:36537495..36539937-chr6:36557300..36560014,2	K562	blood:

No data

Variant related genes	Relation type
SRSF3	TF binding region
ENSG00000112079	Chromatin interaction
ENSG00000150907	Chromatin interaction
ENSG00000239964	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs596907	0.84[ASW][hapmap];0.90[YRI][hapmap]
rs600382	0.82[ASW][hapmap]
rs600461	0.82[ASW][hapmap]
rs614001	0.82[YRI][hapmap]
rs651144	0.82[YRI][hapmap]
rs651553	0.82[YRI][hapmap]
rs669779	0.82[YRI][hapmap]
rs684482	0.82[ASW][hapmap]
rs685109	0.82[YRI][hapmap]
rs9296190	0.82[YRI][hapmap]
rs9296191	1.00[AMR][1000 genomes]
rs9470315	0.82[ASW][hapmap]
rs9470331	0.82[YRI][hapmap]
rs9470339	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470340	1.00[AMR][1000 genomes]
rs9470342	1.00[AMR][1000 genomes]
rs9470349	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs9470351	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap]
rs9470352	0.82[LWK][hapmap];1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36551600-36560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:36551600-36560600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36553400-36561000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:36553800-36561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:36554600-36561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:36556200-36560000	Weak transcription	K562	blood
7	chr6:36558200-36561000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:36558400-36560200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:36558400-36560200	Weak transcription	Hela-S3	cervix
10	chr6:36558400-36560600	Weak transcription	Placenta	Placenta
11	chr6:36558400-36561200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:36558400-36561200	Weak transcription	A549	lung
13	chr6:36558400-36561400	Weak transcription	HSMMtube	muscle
14	chr6:36558600-36560200	Weak transcription	HMEC	breast
15	chr6:36558600-36561000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:36558600-36561000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:36558600-36561000	Weak transcription	Osteobl	bone
18	chr6:36558600-36561200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:36558600-36561200	Weak transcription	HSMM	muscle
20	chr6:36558600-36561200	Weak transcription	NH-A	brain
21	chr6:36558600-36561200	Weak transcription	NHEK	skin
22	chr6:36558600-36561200	Weak transcription	NHLF	lung
23	chr6:36558600-36561400	Weak transcription	NHDF-Ad	bronchial
24	chr6:36558800-36561000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:36558800-36561200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:36559400-36561200	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:36559400-36561200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr6:36559400-36561200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:36559400-36561200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:36559600-36560400	Enhancers	Dnd41	blood
31	chr6:36559600-36560800	Enhancers	HepG2	liver
32	chr6:36559600-36561000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:36559600-36561400	Enhancers	Primary hematopoietic stem cells	blood
34	chr6:36559800-36560200	Enhancers	Spleen	Spleen
35	chr6:36559800-36560600	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:36559800-36561000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:36559800-36561000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:36559800-36561000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:36559800-36561000	Enhancers	Fetal Thymus	thymus
40	chr6:36559800-36561200	Enhancers	Primary B cells from cord blood	blood
41	chr6:36559800-36561200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:36559800-36561400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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