Variant report

Variant	rs669779
Chromosome Location	chr6:36539663-36539664
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36539071..36541420-chr6:36578039..36580553,2	K562	blood:
2	chr6:36538389..36544873-chr6:36560913..36564141,7	K562	blood:
3	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:
4	chr6:36537495..36539937-chr6:36557300..36560014,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1617092	0.95[AFR][1000 genomes]
rs1619794	0.81[AFR][1000 genomes]
rs1744648	1.00[AMR][1000 genomes]
rs1744661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794624	0.80[AFR][1000 genomes]
rs1794626	1.00[AMR][1000 genomes]
rs582922	1.00[AMR][1000 genomes]
rs594369	1.00[AMR][1000 genomes]
rs594980	1.00[AMR][1000 genomes]
rs594999	1.00[AMR][1000 genomes]
rs596879	1.00[AMR][1000 genomes]
rs596907	0.85[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600382	0.81[LWK][hapmap];1.00[AMR][1000 genomes]
rs600461	0.85[LWK][hapmap];1.00[AMR][1000 genomes]
rs605925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606601	1.00[AMR][1000 genomes]
rs606781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607009	1.00[AMR][1000 genomes]
rs607735	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609612	1.00[AMR][1000 genomes]
rs609933	0.91[AFR][1000 genomes]
rs611583	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612098	1.00[AMR][1000 genomes]
rs614001	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs622171	0.95[AFR][1000 genomes]
rs623413	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624670	1.00[AMR][1000 genomes]
rs626511	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628564	1.00[AMR][1000 genomes]
rs629469	1.00[AMR][1000 genomes]
rs638411	0.95[AFR][1000 genomes]
rs643877	0.95[AFR][1000 genomes]
rs644634	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs646501	0.95[AFR][1000 genomes]
rs651070	0.95[AFR][1000 genomes]
rs651144	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs651553	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs652896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653077	1.00[AMR][1000 genomes]
rs655573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs656049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs656896	0.81[AFR][1000 genomes]
rs659189	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667632	1.00[AMR][1000 genomes]
rs668023	1.00[AMR][1000 genomes]
rs668460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668553	1.00[AMR][1000 genomes]
rs674713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs675619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs682937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684354	1.00[AMR][1000 genomes]
rs684482	0.85[LWK][hapmap];1.00[AMR][1000 genomes]
rs685109	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs686478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs688126	1.00[AMR][1000 genomes]
rs7774108	0.82[YRI][hapmap]
rs9296189	0.87[ASW][hapmap];0.85[YRI][hapmap]
rs9296190	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9470315	0.81[LWK][hapmap];1.00[AMR][1000 genomes]
rs9470318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470327	0.91[AFR][1000 genomes]
rs9470328	0.95[AFR][1000 genomes]
rs9470329	0.91[AFR][1000 genomes]
rs9470331	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9470332	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv350009	chr6:36539364-36541435	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
2	chr6:36535000-36546400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:36535000-36546800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:36535600-36541000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:36539600-36541400	Enhancers	Hela-S3	cervix
7	chr6:36539600-36541400	Enhancers	HepG2	liver

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