Variant report

Variant	rs596907
Chromosome Location	chr6:36534854-36534855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36533445..36535608-chr6:36560732..36562496,2	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1744648	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1744661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794624	0.98[AFR][1000 genomes]
rs1794626	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs582922	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594369	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594980	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594999	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs596879	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600382	0.96[LWK][hapmap];0.96[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600461	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs605925	1.00[AMR][1000 genomes]
rs606601	1.00[AMR][1000 genomes]
rs606781	1.00[AMR][1000 genomes]
rs607009	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607735	1.00[AMR][1000 genomes]
rs609612	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs612098	1.00[AMR][1000 genomes]
rs614001	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs623413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs626511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628564	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs629469	1.00[AMR][1000 genomes]
rs644634	1.00[AMR][1000 genomes]
rs651144	1.00[YRI][hapmap]
rs651553	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs652896	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653077	1.00[AMR][1000 genomes]
rs653864	0.82[AFR][1000 genomes]
rs655573	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs656049	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs659189	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs667632	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668023	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668460	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668553	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs669779	0.85[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs674713	1.00[AMR][1000 genomes]
rs675619	1.00[AMR][1000 genomes]
rs682937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684482	1.00[LWK][hapmap];0.87[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685109	0.85[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs685261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685997	1.00[AMR][1000 genomes]
rs686057	1.00[AMR][1000 genomes]
rs686478	1.00[AMR][1000 genomes]
rs688126	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774108	0.84[ASW][hapmap];0.90[YRI][hapmap]
rs9296189	0.84[YRI][hapmap]
rs9296190	1.00[YRI][hapmap]
rs9462199	0.94[AFR][1000 genomes]
rs9470315	1.00[LWK][hapmap];0.96[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470331	1.00[YRI][hapmap]
rs9470349	0.82[YRI][hapmap]
rs9470351	0.84[ASW][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
2	chr6:36531800-36535000	Weak transcription	A549	lung
3	chr6:36532000-36535000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:36533800-36535000	Enhancers	Fetal Intestine Large	intestine
5	chr6:36533800-36535200	Enhancers	Fetal Intestine Small	intestine
6	chr6:36534000-36535600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:36534200-36535200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:36534600-36535800	Flanking Active TSS	HepG2	liver
9	chr6:36534800-36535000	Enhancers	Primary B cells from cord blood	blood
10	chr6:36534800-36538000	Weak transcription	Monocytes-CD14+_RO01746	blood

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