Variant report

Variant	rs596879
Chromosome Location	chr6:36528282-36528283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36525777..36528284-chr6:36528630..36530476,2	MCF-7	breast:
2	chr6:36521727..36524987-chr6:36525376..36528528,3	K562	blood:
3	chr6:36528196..36530114-chr6:36547520..36549033,2	K562	blood:
4	chr6:36523665..36533327-chr6:36560183..36564350,15	K562	blood:
5	chr6:36525623..36528471-chr6:36530038..36531667,2	MCF-7	breast:
6	chr6:36524883..36528605-chr6:36543628..36546021,5	MCF-7	breast:
7	chr6:36526847..36533401-chr6:36560234..36564615,11	K562	blood:
8	chr6:36524459..36530212-chr6:36535986..36541139,5	MCF-7	breast:
9	chr6:36521237..36523227-chr6:36525376..36528336,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1744648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1744661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1794623	1.00[AMR][1000 genomes]
rs1794624	0.81[AFR][1000 genomes]
rs1794626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs582922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs594999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs596907	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs600461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs605925	1.00[AMR][1000 genomes]
rs606601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs606781	1.00[AMR][1000 genomes]
rs607009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs607735	1.00[AMR][1000 genomes]
rs609612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs611583	1.00[AMR][1000 genomes]
rs611661	1.00[AMR][1000 genomes]
rs612098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614001	1.00[AMR][1000 genomes]
rs623413	1.00[AMR][1000 genomes]
rs624670	1.00[AMR][1000 genomes]
rs626511	1.00[AMR][1000 genomes]
rs628564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs629469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs644634	1.00[AMR][1000 genomes]
rs652896	1.00[AMR][1000 genomes]
rs653077	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653864	1.00[AFR][1000 genomes]
rs655573	1.00[AMR][1000 genomes]
rs656049	1.00[AMR][1000 genomes]
rs659189	1.00[AMR][1000 genomes]
rs667632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs668460	1.00[AMR][1000 genomes]
rs668553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs669779	1.00[AMR][1000 genomes]
rs674713	1.00[AMR][1000 genomes]
rs675619	1.00[AMR][1000 genomes]
rs682937	1.00[AMR][1000 genomes]
rs684354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs684482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685109	1.00[AMR][1000 genomes]
rs685261	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs685997	1.00[AMR][1000 genomes]
rs686057	1.00[AMR][1000 genomes]
rs686478	1.00[AMR][1000 genomes]
rs688126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36523400-36528400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:36524000-36529600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:36525200-36531400	Weak transcription	HSMMtube	muscle
4	chr6:36525800-36530200	Weak transcription	A549	lung
5	chr6:36525800-36540200	Weak transcription	Placenta	Placenta
6	chr6:36527000-36531400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:36527600-36531200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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